DTR Labs

Location

Publications

Jobs

Contact Info

• Nishanth Marthandan, Stan Klyza, Shuwei Li, Thomas Kodadek, and Harold R. “Skip” Garner, Construction and Evaluation of an Automated Light Directed Protein-Detecting Microarray Synthesizer, accepted, IEEE Transactions on NanoBioscience
• Mounir Errami, Justin M.Hicks, Jonathan D. Wren, Tara C. Long and Harold R. Garner, Déjà vu – A study of Plagiarism and Duplication in Medline, accepted, BioInformatics.
• Scott T. Moen, Linsey A. Yeager, William S. Lawrence, Cindy Ponce, Cristi L. Galindo, Harold R. Garner, Wallace B. Baze, Giovanni Suarez, Johnny W. Peterson, Ashok K. Chopra, Transcriptional profiling of murine organ genes in response to infection with Bacillus anthracis Ames spores, accepted, Microbial Pathogenesis
• Tanaka, Y. and Kohler, J. J. (2008) Photoactivatable crosslinking sugars for capturing glycoprotein interactions, J. Amer. Chem. Soc., in press

2007

• Chin, J. W. and Kohler, J. J. (2007) Current and future prospects in biopolymer chemistry, Curr. Op. Chem. Biol., 11: 626-627
• Kohler, J. J. (2007) Chemical biology meets networks, Nat. Chem. Biol., 3: 528-9
• Chin, J. W. and Kohler, J. J. (2007) Current and future prospects in biopolymer chemistry, Curr. Op. Chem. Biol., 11: 626-627
• Lim HS, Archer CT, Kodadek T. Identification of a peptoid inhibitor of the proteasome 19S regulatory particle . J Am Chem Soc. 2007 Jun 27;129(25):7750-1 Epub 2007 May 31
• Kwon YU, Kodadek T Quantitative comparison of the relative cell permeability of cyclic and linear peptides. Chem Biol. 2007 Jun;14(6):671-7.
• Xiao X, Yu P, Lim HS, Sikder D, Kodadek T Design and synthesis of a cell-permeable synthetic transcription factor mimic. J Comb Chem , 2007 Jul-Aug;9(4):592-600. Epub 2007 May 27
• Yu P, Liu B, Kodadek T A convenient, high-throughput assay for measuring the relative cell permeability of synthetic compounds. Nat Protoc. 2007;2(1):23-30
• Xiao X, Yu P, Lim HS, Sikder D, Kodedek T A cell-permeable synthetic transcription factor mimic. Angew Chem Int Ed Engl. 2007:46(16):2865-8
• D. C. German, P. Gurnani, A. Nandi, H. R. Garner, W. Fisher, R. Diaz-Arrastia, P. O’Suilleabhain, K.P. Rosenblatt, Serum biomarkers for Alzheimer's disease: proteomic discovery, Available online 18 June 2007, Biomedicine and Pharmacotherapy
• Jyoti K. Shah, Harold R. Garner , Michael A. White, David S. Shames and John D. Minna, sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open source siRNA database, BMC Bioinformatics 2007; 8:178
• Mark F. Burkart, Jonathan D. Wren, Jason I. Herschkowitz, Charles M. Perou and Harold R. Garner, Clustering of Microarray-Derived Gene Lists through Implicit Literature Connections, Bioinformatics Vol 23, Number 15, Pp. 1995-2003
• Wayne G. Fisher, Kevin P. Rosenblatt, David A. Fishman, Gordon R. Whiteley, Alvydas Mikulskis, Scott A. Kuzdzal, Mary F. Lopez, and Harold R. Garner, A Robust Biomarker Discovery Pipeline for High Performance Mass Spectrometry Data, Journal of Bioinformatics and Computational Biology, Vol. 5, No. 5, Oct. 2007
• Kar-wai Ng and Harold R. Garner Nome della Proteina: A protein identification resolution database, IEEE Engineering in Genomics, 2007 Jul-Aug; 26(4): 70-2.
• Mounir Errami, Jonathan D. Wren, Justin M. Hicks and Harold R. Garner, eTBLAST: A web server to identify expert reviewers, appropriate journals and similar publications, Nucleic Acids Research server issue, 2007, April 22 on line
• Jeffrey Laidlaw, Kar-wai Ng, Harold R. Garner, Rama Ranganathan, John W. Fondon III, Elevated basal slippage mutation rates among the Canidae, J Hered. 2007 Apr 16 Vol 98, Number 5 Pp452-460
• Amin A. Fadl, Cristi L. Galindo, Jian Sha, Fan Zhang, Harold R. Garner, Hui-Qun Wang, and Ashok K. Chopra, Global Transcriptional Responses of Wild-type Aeromonas hydrophila and its Virulence-deficient Mutant in a Murine Model of Infection, Microb Pathog. 2007 May-Jun;42(5-6):193-203
• Steve Crozier and Harold R. Garner, An ensemble method of RNA secondary structure prediction yields insight not available from free energy minimization methods, IEEE Engineering in Biology and Medicine, 2007 Jan-Feb;26(1):72-86.
• Harold R. Garner, Justin Hicks, Jonathan D. Wren and Mounir Errami, Medline: the knowledge buried therein, its potential and cost, IEEE Engineering in Biology and Medicine, May-June 2007, Vol 26, Issue 3, PP 73-74
• John W. Fondon, III, and Harold R. Garner, Detection of length-dependent effects of tandem repeat alleles by 3-D geometric decomposition of craniofacial variation, Development, Genes and Evolution 2007 Jan; 217:79–85, 2007.
• Paras Khandheria and Harold R. Garner, Developing a Modern Web Interface for Database-Driven Bioinformatics Tools, IEEE Engineering in Biology and Medicine, 2007 Mar-Apr;26(2):96-8.
• Desko, M. M. and Kohler, J. J. (2007) Glycosylation of proteins in the Golgi apparatus, Wiley Encyclopedia of Chemical Biology, in press
• Kohler J. J. (2007) Chemical biology meets networks, Nat. Chem. Biol., 3: 528-9

• Bond, M. R. and Kohler, J. J. (2007) Chemical methods for glycoprotein discovery, Curr. Op. Chem. Biol., 11: 52-58
• Elayadi, Anissa N.; Samli, Kausar N.; Prudkin, Ludmila; Liu, Ying-horng; Bian, Aihua; Xie, Xian-Jin; Wistuba, Ignacio I.; Roth, Jack A.; McGuire, Michael J.; Brown, Kathlynn C. (2007) “A peptide selected by biopanning identifies the integrin avß6 as a prognostic biomarker for non-small cell lung cancer” Cancer Res. 2007 June15; 67:5889-5895.
• Kwon YU, Kodadek T Quantitative evaluation of the relative cell permeability of peptoids and peptides. J Am Chem Soc. 2007 Feb 14;129(6):1508-9
• José A. Cabrera, Kim Hoggatt-Krumwiede, Lewis Calver, Harold Garner,
  Expanding Researchers’ Understanding of Effective Corporate Identity Design for Company Spin Outs, accepted, Journal of Biomedical Communications, 2007
• Tony J. Ragucci, Alan Cisar, Michael L. Huebschman and Harold R. Garner, Film Strain Measurement through Hyperspectral Polarimetry, Proceedings of American Institute of Aeronautics and Astronautics, 2007
• McGuire, Michael J.; Li, Shunzi; Brown, Kathlynn C. (2007) “Biopanning of Phage Displayed Peptide Libraries for the Isolation of Cell-Specific Ligands” in press as a book chapter in Methods in Biosensor Technologies, Avraham Rassoly, editor.
• Lin, Mai; Lubag, Angelo; McGuire, Michael J.; Seliounine, Serguei Y.; Tsyganov, Edward N.; Antich, Peter P.; Sherry, A. Dean; Brown, Kathlynn C.; Sun, Xiankai (2007) “Advances in molecular imaging of pancreatic beta cells” Frontiers in Biosciences In press.